clonker

Expose minRMSD metric directly

2

instead of importing it implicitly upon construction of clustering estimators

Issue deprecation warnings

2

- [x] for coordinates package (#1557) - [ ] for MSM package - [ ] for TRAM and dTRAM in thermo package - [x] for plotting package where appropriate What...

Examples how to migrate code from current PyEMMA API to deeptime

1

- [ ] for coordinates package - [ ] for msm package - [ ] for thermo package

Integrate dTRAM into deeptime

2

... and deprecate in thermo package

Usage of pathlib in coordinates package

1

I think it would be good to modernize the `pyemma.coordinates` package a bit and consistently use `pathlib` instead of string manipulations and the `os` module.

Improve article 2110.15013

1

Hi guys, thank you for your very cool project! The article does not render at all, presumably because of how the bibliography is handled:  We include it via ```latex...

Add optional dependency to pint for units

It should be possible to implement the CK-test based on `KoopmanModel`s and not only `CovarianceKoopmanModel`s.