clement grisi
clement grisi
Hi @Richarizardd, I had a quick follow-up question regarding point 2. How did you work at patient-level with HIPT when there are multiple slides per patient? Let's say patient A...
After having dived into MCAT code, I found at that -- at least in MCAT -- you did concatenate the sequence of embeddings when multiple slides were available. I assume...
Hi @Bontempogianpaolo1, not sure if it's still relevant but I've implemented the functionality you were looking for as it happened I also needed it. Basically, I've created an additional method...
same error, used to work well but fails since today.
interesting, for me `pip install --no-cache-dir --extra-index-url https://pypi.nvidia.com/ cuml-cu11==23.10.0` didn't work either (same error ; tried older versions too)
issues seems fixed for me. fyi I'm using the conda installation.
in case you're interested, I adapted CLAM preprocessing pipeline and add some nice improvements (e.g. multi-cpu preprocessing) : https://github.com/clemsgrs/hs2p
sure, happy to chat. I’ve made my own version of the code here: https://github.com/clemsgrs/hipt you can contact me at: clement (dot) grisi (at) radboudumc (dot) nl
they use CLAM preprocessing pipeline to extract (4096, 4096) regions you can take a look at https://github.com/clemsgrs/hs2p where I re-implemented & twisted CLAM preprocessing code
hi @hovinh, have you found out how to reproduce the grayish image with same cmap ?