Clement Helsens

minimap2 large memory consumption inside souporcell pipeline

11

Hello, following this issue: https://github.com/wheaton5/souporcell/issues/179 minimap is used in souporcell pipeline like: https://github.com/wheaton5/souporcell/blob/master/souporcell_pipeline.py#L255#L257 I am out of ideas and thus reach out in case you have any suggestions. I could...

Alignment with minimap2 -> very large memory consumption

9

Hello! during the alignment process with `minimap2` I suffer from a very large memory consumption for only one of the 20 threads I use. I investigated what could be different...