ckuenne

Blacklisted regions sometimes very large: disable 20k merge?

2

hi, i have checked your mouse mm10 blacklists against some of my atac datasets and found that the regions excluded are sometimes really large. much larger than the actual regions...

Automatic threshold determination

8

Hi, is there a systematic way to find meaningful cutoffs for -s/-w? How do you decide on these? Best, Carsten