DataHarmonizer
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cidgoh
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the...
LinkML provides facilities for automatic generation of web documentation about a model, from the annotation of the model in the core data schema (YAML) file. A recent example of such...
We want the functionality, tied to LinkML specifications for a field to allow selected terms from one or more ontology branches or cherry-picked terms from them. Beyond this, we also...
Possible we can add support for language localization for non template values? My assumption that need one template for each language that we support. example: MPX_French MPX_English
This project requires adding a "container" construct to a LinkML schema which DataHarmonizer can read and setup tables for. This translates to creating tables to view/manage records with primary keys...
As we deprecate temporarily minted GENEPIO terms for the preferred domain ontology term, we will run into users having validation/consistency errors if they don't manually update to the new IDs...
Code should be made more efficient so that regex is compiled once and reused.
This is just a starting point of a discussion and not necessarily fully thought-out yet. The basic idea is that a schema (LinkML or otherwise) generally can't capture _everything_ about...
@pkalita-lbl an example case would be associating NMDC minted `id`s with entries in the Submission Portal, but not showing them
Say I have these columns 1. `sample ID` 2. `sample name` 3. `temperature` 4. ...more... Could `sample ID` and `sample name` be frozen, so that they always appear on the...
Is it possible in schema_enums/schema_slots tsv files that you can have a hidden column(s) with default value(s) that are sent when an user clicks on export/save as? Example : Column...