Chun-Jie Liu

icon indicating a website link https://chunjie-sam-liu.life icon indicating an email [email protected]

icon company Children's Hospital of Philadelphia (CHOP) icon location Philadelphia, U.S. icon location Genetics & Bioinformatics. Computational and Genomic Medicine Center, @Xinglab

Results 3 issues of Chun-Jie Liu

Cromwell Failed to summarize metadata

8 comment

I'm working on mutation calling based on cromwell, the **Failed to summarize metadata** comes out for several shards in the scatter, then the following processes are aborted. How to fixed...

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4 comment

RNAcocktail is a very impressive tool to process almost all kinds of analyses based on RNA-seq data. But the tools integrated in the RNAcocktail has not been updated for a...

Seurat v5 not compatible with Azimuth

I tried to run the command below and get the error becuase of compatibility with Seurat v5 ``` Azimuth::RunAzimuth( query = "PBMC_10K_output/filtered_feature_bc_matrix.h5", reference = "pbmcref" ) ``` ``` Error in...