chrkuo

@bmill3r Thank you so much. I spent the whole morning going through the documentation of for 10x and it's been quite helpful but I ran into an error with a...

@bmill3r thank you so much. I hope it's okay that I add a few more questions in the mean time. **Aside from filtering via pixel are there any additional methods...

@bmill3r wanted to check in and follow up Sorry I know i asked a few questions. Truly appreciate your time and assistance!!!

@bmill3r that was extremely helpful and thorough explanation thank you. it seems like the more heterogeneous my tissue is the harder it is to deconvolve them - this assumption is...

@bmill3r wanted to follow up regarding how to generate such matrix or gene sets for deconvolution annotation. I'm sort of stuck at this step. would really appreciate it if there's...

Thank you so much Brendan @bmill3r, as always really appreciate your prompt and thoughtful responses. This has been extremely helpful. and yes your answers absolutely makes sense. As I work...

it seems like RegionNeighbours function removes 931 spots, i.e. 931 are not nbs_2 and 316 are but the data frame is somehow wrong as an input for featureoverlay can you...

this is my dataframe after running RegionNeighbours function [1] NA NA NA NA NA NA NA NA NA NA NA NA NA NA [15] NA NA NA NA NA NA...

@jbergenstrahle appreciate it if you could kindly assist - i think there's a bug in the package that isn't allowing me to map these regions of interest.

@edward130603 thank you -- since spatial transcriptomics are not single cell resolution after enhancing the clustering and resolution to subspot level - is there downstream analysis to then deconvolute that...