Chris Wyatt

Parsing section with examples has been added :https://github.com/seqeralabs/nf-training-public/blob/Autumn_update/asciidocs/parsing.adoc Needs review and json module calling section

This section is here: https://github.com/seqeralabs/nf-training-public/blob/master/asciidocs/tower.adoc It is a simplification of tower docs with 1 example. @drpatelh suggests that we link to the tower docs (that are updated), instead of a...

Did it run in the end? It shouldn't really take that long unless there was a problem with SRA or a local connectivity issue. Are you sure you entered the...

Ok, thanks, yes I just downloaded it and ran from the browser. I think your way can be hard coded into gitpod

See : https://github.com/nextflow-io/rnaseq-nf/issues/7 I assume you are running from an M1 mac. There are a few potential fixes in the above link.

Hi, Thanks, ok thats good to know regarding `bc`. Maybe its because my dataset is a small test dataset for testing. It is just about a third of Drosophila yakuba's...

I will try again next week, and let you know (Away this week). It was all run in a container, so I do not have the results folder to hand,...

This actually may have been a macM3 arm issue, that I couldn't get `correct` working. Works fine on ubuntu 22.04 with the gcc11. I can close unless someone has thoughts...

Thanks for spotting, pretty sure it's due to using an admonition within a list. Fixed in https://github.com/nf-core/website/pull/2775

Happy to try tackling some of the issues here. Is the plan to tackle this module by module?, or try to script some of the changes, before bulk checking that...