Tian Chu

Can't implicitly convert non-string objects to strings. Bug about tl.filter_rank_genes_groups and tl.rank_genes_groups

1

### Please make sure these conditions are met - [X] I have checked that this issue has not already been reported. - [X] I have confirmed this bug exists on...

I am running Numbat on my own single cell data. How to generate the plotEmbedding in a numbat object?

Input X contains NaN.

5

dyn.tl.cell_velocities(adata, method='kmc', other_kernels_dict={'transform': 'sqrt'}) raise 'Input X contains NaN.'

H should have the same dtype as X. Got H.dtype = float32.

3

In cnmf it has been solved, But in omicverse its still here.

Torch error

1

I think its very hard to install celldancer. Numpy is too low to install pandas

...

Error in ge %*% M.AV : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102 Calls: makeSeuratMC -> supercell_GE -> %*% -> %*% In addition: Warning messages: 1: In asMethod(object) : sparse->dense coercion: allocating vector of size 19.0 GiB 2: In asMethod(object) : sparse->dense coercion: allocating vector of size 2.5 GiB Execution halted

1

Error in ge %*% M.AV : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102 Calls: makeSeuratMC -> supercell_GE -> %*% -> %*% In addition: Warning messages: 1: In...