Chris Odhams

Thanks @ischeller , Just an additional note - that the drop installation also requires `unzip` i.e.: unzip=6.0=h4e0d66e_3 as it breaks if this is not included in the YAML. Cheers,

Hi @ischeller , Wondering if you have any updates on this? Best,

Hi @neverov-am @vyepez88 - it seems that the drop bioconda package is not in the yaml. It was there before (drop=1.3.3=pyhdfd78af_0). Cheers,

Hi @ischeller , Thanks for this information. The run above actually timed out after a week of run time - it didn't progress past the '_Fri Jun 2 07:01:04 2023:...

Hi @ischeller, Thanks for getting back. I've rerun using 700GB total memory split over 10 cores (70GB per core) for FRASER2 using 314 samples (using the same config above). It...

Hi @vyepez88 , Thanks for getting back, so: ``` > fds dim(fds) [1] 167512 314 > counts(fds, type = 'psi3') matrix of class DelayedMatrix and type "integer": X Y ......

Hi @vyepez88, Sorry I was still waiting for confirmation of jobs to complete. I ran for a subset of 39 samples as a test and it still did not complete...

Just setting that up now. I'm sure this ran successfully when we initially installed DROP but I'll run again just to confirm!

Hi @vyepez88 , This might take some time - I'm coming across different errors now and trying to debug. Just to say that a collaborator who is working on the...

Hi @vyepez88 - haven't had time to check i'm afraid - will hopefully be in the new year. I was blocked by https://github.com/gagneurlab/drop/issues/489 for a while - but this is...