Christopher Hendra

Hi Annie, I think that is only a warning thrown out by pandas and not an error message, the program should still be running. Did you see an increase in...

so during the daraprep xpore will index your eventalign.txt first before it writes something to data.json. Can you check the eventalign.index file? Try wc -l eventalign.index to see if it...

Hi Annie, thanks for running it again It seems that the indexing works successfully, and the error seems to indicate that you did not provide the fasta file using the...

I am encountering the same error with 1080TI with the following specs ``` Fri Feb 25 10:38:12 2022 +-----------------------------------------------------------------------------+ | NVIDIA-SMI 510.47.03 Driver Version: 510.47.03 CUDA Version: 11.6 | |-------------------------------+----------------------+----------------------+...

Hi, I've managed to solve this issue by just reducing the batch size. Seems like this is an out of memory error for me that is somehow being reported as...

hi Elton, Seems like there is a nan entry in your data somewhere and hence the key error, can you print the first few lines of your eventalign.txt file, the...

hi @eltonjrv, really sorry for my late reply - I have been quite occupied the past few weeks with work. I am not sure yet what's causing this error since...

hi @Albertperlas, apology for the late reply, I've been busy at work. Can I check with you the size of eventalign.txt, the command that you used to run nanopolish eventalign...

hi @Albertperlas, your eventalign.index looks fine, so I'm a bit perplexed with this eror. Could it be that you don't have enough reads per position? Can you try to set...

hi @Albertperlas and @baishengjun the warning should not affect the result I think. This seems to be related to the nanopolish eventalign.txt file but I am not sure what is...