Mark Forrer

Read task tombstones from Celery database back-end, if configured

5

I'm using a database back-end for Celery so that I can have task tombstones for failure recovery purposes. I like Flower's default behavior of showing tasks that executed while it...

Error using TPOT with numpy >= 1.24.0 (or fresh TPOT installs)

4

## Context of the issue Newer releases of Numpy (and by extension, fresh installs of TPOT) are not compatible with the latest TPOT code and `requirements.txt`. Several deprecated numpy aliases...

Export commit hashes for target & base model repos

4

Models exported from N2A seem to be often (always?) derived from git repos, which may be modified over time. If this is a common workflow, it may be useful to...

Export model params as JSON

1

Following up to report/track some issues touched on in recent email discussions. My understanding is that N2A's current `model.params` files were usefully / thoughtfully hacked together as a stopgap. Exporting...

Consider removing absolute paths from `model.sh`

4

As part of testing exported models, I realized that `model.sh` files generated during export contain several absolute paths to the export directory. Ideally from my perspective, `.sh` files should avoid...

neff not respected when optional acor dependency missing

1

Reading through the body of `sample()`, I realize that statements about the optional `acor` dependency in the README, that I also propagated into log messages in #24, are not correct....

Document and / or correct repeatability

3

I'm hoping to use `PTMCMCSampler` in a production-quality [scientific application](https://github.com/JBEI/ART), where repeatability is important for error diagnosis and / or for peer review. I see that repeatability hasn't been specifically...

Replace remaining calls to legacy `np.random.seed()`

1

Thanks for all of your work on TPOT! I and my colleagues use it very often for a variety of synthetic biology research projects. I'd like to ask that TPOT...

ENH: Add optional `dtype` parameter to `Generator's` distribution methods

2

### Proposed new feature or change: Many `np.random.Generator` [distribution methods](https://numpy.org/doc/stable/reference/random/generator.html#distributions) generate floating point arrays, but don't accept a `dtype` parameter to control the desired precision. As a result, the generated...

Remove jupyter as a dependency (+maybe others)

4

Installing TPOT2 unexpectedly added Jupyter as a requirement for my project. As a general rule, software dependencies should be minimized to reduce bloat and improve resource use. ## Context of...