cherrie-g

About ltr_harvest output

2

Hi Dr.Ou, I have got another question about the input of LTR_retriever. You give an example of how to run ltr_harvest and ltr_finder, and I run the two software as...

Error in apply(prob.pathways.sig, 3, sum) : 'MARGIN' does not match dim(X)

6

Hi, I have met a error which I saw many users met but none gave a solution. The problem is, when I created and run cellchat using the Seurat::FindCluster column...

getValidBarcodes() need to be modified to compatible with the output of Cell Ranger ATAC version higher than 2.0

1

**Describe the bug** Hi there, I‘m using ArchR to analysis my ATAC data. And I want to do barcode filtering in `createArrowFiles` step. I found that `getValidBarcodes` could help me...