Chengyu Ye

Hi @prete , thanks for your reply. The original format of my data is Seurat format. I made an intial try to convert seurat to scanpy. However, the instruction on...

To be more specific, i followed the instruction on the cellphonedb website. However, the h5ad format generated by 'sceasy' has no attribute called 'norm' or 'set_index'. Thus, it seemed that...

> I see, you're trying to extract the txt/tsv counts file from the generated h5ad as explained [here](https://www.cellphonedb.org/faq-and-troubleshooting#extract-cellphonedb-files-scanpy). > > Starting with v2.1.7, CellPhoneDB allows h5ad files as input to...

> I see, you're trying to extract the txt/tsv counts file from the generated h5ad as explained [here](https://www.cellphonedb.org/faq-and-troubleshooting#extract-cellphonedb-files-scanpy). > > Starting with v2.1.7, CellPhoneDB allows h5ad files as input to...