Christiane Hassenrück

Hi @HitMonk , I have hit the same snag with GTDB. Right now I am working on a snakemake workflow to merge GTDB with the various refseq partitions. If you...

Hi @HitMonk and @choon-sim , sure! I am almost done with the workflow (only running some validation steps at the moment). With this workflow you will then be able to...

Hi @HitMonk and @choon-sim , I am really sorry that I was not able to get back to you sooner. The workflow I am developing is becoming slightly more complicated...

I am also looking for a way to use a dual merging/concatenation approach. I would be reluctant to just use the forward read due to its shorter length and therefore...

Just FYI, the approach of mapping unmerged reads and then concatenating only those which have an insert size that would be too long for merging, seems like a valid approach....

Hi, I had a similar problem as the original comment in this issue, which I fixed with downgrading to the version that you suggested. However, in the downgraded version the...

Hi @benjjneb and others, I only found this issue after I already implemented by own solution using seqkit (happy to share if there is interest, but probably redundant with what...

Hi @kbseah Thanks for your fast reply. Is there maybe a way to work with the existing phyloflash output and maybe just parse the sam file differently to create the...