charlesfoster

Thanks for the fast response. I had wondered about whether the alignment, peptides etc. were needed for the final QC results. For now, I can add a rule to my...

I also have this issue, but on macOS Catalina 10.15.1 (19B2093). The errors, like above, include: /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/unistd.h:780:39: error: expected initializer before '__OSX_AVAILABLE_STARTING' 780 | int sync_volume_np(const char *, int) __OSX_AVAILABLE_STARTING(__MAC_10_8,...

Thanks for the reply - that makes sense. I wonder if, as a feature request, it might be possible to change the error handling in these circumstances? A TypeError from...

@brisback did you have any luck? I'm in the same situation now...

Thanks for the message. Yes, I checked the README, and the solutions weren't working. However, since posting my question, I found other issues stopping me from installing this driver (including...

Hi @rob-p, Thanks for the speedy reply! There are definitely some strange things going on here. I can confirm that the second run (and the others that timed out) didn't...

Cool- I've created the issue over at nf-core (https://github.com/nf-core/rnaseq/issues/948), and have emailed you a link to the reads. Let's hope this is all trivial! Cheers, Charles

I should also now add that I just got an error with `lofreq3` when trying to process a sample... ``` alias lofreq3=/path/to/lofreq # prep BAM samtools sort -u -@ 20...

My bad re: the gene annotations, I just saw the `--all` option - somehow missed it previously. I note that the help option still says: > parser.add_argument('--all', action='store_true', help='Use this...

Thanks for the reply. I'll send it by email if that's okay. Should I use your gmail account from your Github profile?