shasta

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If there is a way I can know which raw reads go to a specific contig?

3

Hi! If there is a way I can know which raw reads go to a specific contig?

WenyuLiang

assembly half the size it should be and low N50

7

I have a fungal genome 30.5Mbp size and reduced nanopore coverage to 70X after filtering. I've filtered for at least average quality 16 and 3000bp read length. I take that...

rob234king

how to collapse trio-binned ONT reads

3

Hello, I have a question which could continue from [#200](https://github.com/chanzuckerberg/shasta/issues/200) I have low coverage of a repetitive plant genome and I would like to optimize the parameters. My situation is...

COMInterop

Do not hardcode BLAS and Lapack libraries. Find them!

10

Blas and Lapack can have different provider (OpenBLAS, MKL, Flexiblas). Do not hardcode the libraries name but rather find them. Same for libpng, find it. Also uses `python3-config` from PATH...

ccoulombe

Configure file on Q20 reads

6

Hi, I'm trying to run Shasta on a ONT Q20 dataset. I‘m wondering if there is another configure for Q20 besides Nanopore-Oct2021? Because I used Nanopore-Oct2021 and the Assembly.fasta file...

zyj1729