Christopher Hann-Soden

HDF5 Output Errors

3

Hello, This issue is traced back from [my original issue posted for Sleuth](https://github.com/pachterlab/sleuth/issues/175). The HDF5 output from Kallisto cannot be read by rhdf5 or Sleuth, although it appears normal to...

HDF5 files not being read properly (hdf5 lib incompatibility, or base R and rhdf5 clash?)

39

sleuth_prep seems to always error with "subscript out of bounds" during step "normalizing est_counts". I'm trying this on my own data since, as others have pointed out, the link to...

Compilation issues (GCC 4.8.5 & 5.4.0)

2

I tried compiling with GCC 4.8.5 and CMake 3.5.2. First, cmake did not correctly detect my GCC version, and failed with error "GCC version must be at least 4.7!". I...