James Hashfield

Can I use MosaicForecast for ~30X WGS dataset?

1

Hi, I used DeepMosaic to detect mosaic SNVs from low-depth WGS data, because it supports low-depth samples, but DM does not call mosaic INDELs. I would like to detect mosaic...

Lumpyexpress produces zero INS and CNV

1

Hi. I ran lumpyexpress with my bam file using default options. But weirdly I got a vcf file that has only DEL, DUP, INV BND but no INS nor CNV....