dan white

This is a large issue, so lets split it into the two main parts. The input / setup GUI and the Results GUI. Now we got lots of issues, and...

Any particular reason to remove it? Why not leave the idea open? Current implementation is in matlab. Few people will.use it due to the activation barrier. An implementation in Coloc...

I rolled back your edit because it removed useful information. Let's talk about what your motives and ideas are here before we agree on any changes. OK?

Hi @stelfrich Ok, thats all good. On the fiji / imagej wiki, Lets leave the text and link to the paper describing PPI, and ADD the link to the webpage...

@stelfrich Looks good! thanks!

Hi folks @bene51 @haesleinhuepf I do remember that if you put 2 identical images as input the maths explodes for some reason that is documented in the code as far...

time series data will trigger this bug eg sample images - mitosis.tif it makes no sense to do analysis on a time series... each time point must be analysed separately....

@ScientistRachel this appears to be a new bug somewhere in Fiji, unless thr code for coloc2 changed recently. Others have also seen this. @ctrueden any clues what changes might have...

@Iacan I will leave implementation details to others more tuned into that, but discuss the general concept end here. I agree that allowing the user to choose any 1 of...

@lacan In short, why not just add the IJ autothreshold methods to the list of thresholding methods to select from. We would need to relabel Costes and bisection to indicate...