Soumaya Chaikhi

hello, Thanks for your reply, you can look at the file or the screen bellow you will find the command I used and what kind of problem I am having....

maybe because I replied in email. well, I will send in the following comment all the text that contains the log and the command I used.

(python3) soumayachaikhi@MacBook-de-Soumaya LongQC % python longQC.py sampleqc -x ont-rapid -o ../assemble_quality ../3_2_GB.fastq longQC:2022-06-21 16:41:05,726:169:INFO:Cmd: longQC.py sampleqc -x ont-rapid -o ../assemble_quality ../3_2_GB.fastq longQC:2022-06-21 16:41:05,726:233:INFO:Preset "ont-rapid" was applied. Options --pb(--ont) is overwritten....