Chahat Upreti

I have a set of 100 bacterial genomes. I annotated them with Prokka and performed pangenome analysis with Roary. Roary outputs the core gene alignment file which I then used...

I have a set of 100 bacterial genomes. I annotated them with Prokka and performed pangenome analysis with Roary. Roary outputs the core gene alignment file which I then used...

Hi, I wanted to ask if there is a `findall` equivalent in TRE. I am trying to do approximate matching for a string in a larger string, and want to...

Question: How do you find novel transcripts using GFFcompare?

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I am trying to find novel transcripts from an RNA-seq database. I tried to follow the protocol provided in the [Nature Protocols][2] paper that described the use of Stringtie; the...

How to use seqlearn in Anaconda?

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Can we somehow install 'seqlearn' in Anaconda so that it can be used in the Spyder platform. I searched but it was not available in anaconda.org database. Any help would...

Hello! Thank you so much for the awesome Conda package to be able to run MLST locally. I am trying to run it on my Mac system. I created a...