cgohil8
cgohil8
Jupyter notebook for competition
open3d is used in the `osl.source_recon` package. It needs to be added to the requirements here: https://github.com/OHBA-analysis/osl/blob/main/setup.py#L11-L17
Would be good to have the option of using parcellation files that include eye balls.
In osl: - We use this function to extract the dimensions from a nifti file: `osl.source_recon.rhino.utils._get_vol_info_from_nii`. - Note, `mri_depth=dims[2]` in this function. - This is used in the forward modelling...
User interface: - We should have more informative errors messages / a validation function for the source reconstruction config. - We should align the wrappers for source reconstruction to the...
**THIS PR IS NOT BACKWARDS COMPATIBLE.** ------------------------------------------------ Changes: - Restructured the output directories/filenames. - The name of the subdirectories is specified via the `subjects` argument in `run_proc_batch` and `run_src_batch`. -...