cgohil8

Jupyter notebook for competition

open3d required in source recon package

2

open3d is used in the `osl.source_recon` package. It needs to be added to the requirements here: https://github.com/OHBA-analysis/osl/blob/main/setup.py#L11-L17

Option to source reconstruct eye ball parcels

2

Would be good to have the option of using parcellation files that include eye balls.

In osl: - We use this function to extract the dimensions from a nifti file: `osl.source_recon.rhino.utils._get_vol_info_from_nii`. - Note, `mri_depth=dims[2]` in this function. - This is used in the forward modelling...

Source Reconstruction Improvements - User Interface/Report

1

User interface: - We should have more informative errors messages / a validation function for the source reconstruction config. - We should align the wrappers for source reconstruction to the...

New output directory structure

11

**THIS PR IS NOT BACKWARDS COMPATIBLE.** ------------------------------------------------ Changes: - Restructured the output directories/filenames. - The name of the subdirectories is specified via the `subjects` argument in `run_proc_batch` and `run_src_batch`. -...