cfz1998
cfz1998
When i try: [smoove annotate --gff $gff3 join_call.smoove.square.vcf.gz | bgzip -c > join_call.smoove.square.anno.vcf.gz ] It always give me: [smoove] 2022/02/17 11:08:27 starting with version 0.2.5 hangup I don't know the...
When I run the example data. I get a error. ERROR in file /home/chaofan/software/BRAKER/scripts/startAlign.pl at line 763 failed to execute: /home/chaofan/miniconda3/envs/EDTA/bin/spaln -Q7 -O0 /home/chaofan/software/BRAKER/example/test3/braker/tmp_spaln/genomeX4.fa proteins_addstop.fa > /home/chaofan/software/BRAKER/example/test3/braker/align_spaln/X4.spaln.aln 2>/home/chaofan/software/BRAKER/example/test3/braker/align_spaln/X4.spaln.stderr! The cmdline...
There are two repeat regions in my contig. And `nextPolish` does not polish this region. The IGV picture using nano_reads mapping to the polished genome.  It's also not polished...
Hi! I get a error! Gd:0 No:0 My:4096 MS:0 Mb:21588 Tw:0 Tl:123750096 0.00 100.00 0.00 : Block table may be destroyed ! What's means about this! When i used braker2...
Hi! @stschiff Does MSMC2 work for haploid? My organisms is haploid. Thank you for your reply! --CFZ
It had running for about 3 hours. Does it normally?  ![Uploading image.png…]()