Carlos Sánchez comments

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                                            Carlos Sánchez

cd-hit-para.pl issue

Hello @tianrenmao. I wonder if cd-hit really support openmpi. I did some test and it dosen't run on parallel. do you compile cd-hit?

Error in parse_repo_spec(repo) : Invalid git repo specification: 'biom'

I got the same error Edit: I installed it with: install_github("joey711/biom")

Different outputs depending on the file

Hi, @advaitb, thanks you for your answer. I attach you the output files. Just the .grr, .tree and .xmfa. [P_2019_11_11_092950535099.zip](https://github.com/marbl/parsnp/files/3845524/P_2019_11_11_092950535099.zip)