Céline Provins
Céline Provins
For each image that is processed by MRIQC, it generates an associated 'timeseries.json' file. Yet, that file always contains the same information. I propose writing a single `timeserie.json` at the...
### What happened? I built the singularity image from the Dockerfile as it currently is in nipreps/mriqc:master and tried to run it on our dense-sampling dataset containing DWI images. But...
Only one FD timeserie is computed in a multi-echo dataset, unlike DVARS, quality, and outliers for which one timeserie per echo is computed. Closes #1178
### What happened? The dwi key is not defined in the QCGROUPS dictionary in `mriqc/reports/groups.py` l.46 ### What command did you use? ```shell mriqc /data/datasets/hcph /data/derivatives/hcph-derivatives/mriqc_23.2.0/ --verbose-report group -vv ```...
### What happened? For now, it is not possible to scroll in the rating widget, so when the Overall quality rating section is open, the end of the artifacts list...
### What happened? Everytime I run dMRIPrep this warning appears. ### What command did you use? ```shell singularity run -e -B $DATADIR/inputs:/data:ro \ -B ${WORKDIR}:/work \ -B ${OUTDIR}:/out \ -B...
enh: implement an interface to generate a textual summary for DWI enh: save the summary in html form using DerivativesDataSink enh: modify models output of NumberOfShells so it returns 0...
### What happened? I was also running into the issue mentioned in #1282, which has been solved. However, the problem of multi-echo lists resurfaces here https://github.com/nipreps/mriqc/blob/04c1b90754b373f44e5a537b44df91fa46a330e4/mriqc/workflows/functional/base.py#L119 ### What command did...
The left-right flip detection runs the alignment algorithm after flipping the BOLD image and compares the costs of aligning the T1w with the flipped BOLD and with the original BOLD....