smetana

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Species METabolic interaction ANAlysis (SMETANA) is a python-based command line tool to analyse microbial communities.

It takes as input a microbial communtity (from a collection of genome-scale metabolic models in SBML format) and computes of several metrics that describe the potential for cross-feeding interactions between community members.

Documentation

For more details please check: http://smetana.readthedocs.io/

Installation

Can be easily installed using pip:

pip install smetana

Citing SMETANA:

The algorithms here implemented have been previously described in: Zelezniak et al, PNAS (2015).