carveme
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cdanielmachado
CarveMe: genome-scale metabolic model reconstruction
Hi Daniel, I was wondering if you think ill be able to use your package to create a metabolic model for Basidiomycete fungi? And if not could you recommend a...
Buenas. Me pregunto si hay algún servidor con todas las librerías y paquetes ya instalados para poder hacer mis prácticas. Lo necesito porque ya he instalado carveme en mi computadora,...
Hi Daniel, I was looking into how the gap filling works. I saw that new exchange reactions have lower bounds set to 0. If I understand correctly, this means the...
Hello, I am still having the same problem with CarveMe version 1.4.1 when I try to merge two models and create a community model (see #95 ). Any ideas where...
Hi Daniel, I have seen the following warning sometimes pop up during model reconstruction with CarveMe, complaining that gene association for certain reactions are not in disjunctive normal form (DNF)....
Dear author, I installed locally from the latest Github version and am trying to run carveme through the metaGEM pipeline. When calling carve, I have to specify the full python...
Hello, Mr Machado First of all I want to say that CarveMe is really a powerful tool! In my standpoint, the top-down reconstruction pepline will gradually become the main method...
Hi is there simpler documentation for CPLEX available out there? I am trying to install CarveMe on a docker container and I'm struggling with the CPLEX installed as well as...
Hi, First of all I want to say that CarveMe is really an amazing tool! Thanks for making it so easy to use! I am using it to reconstruct various...
Hi, I just started working with carveme, but it seems the program generates invalid SBML models. Is there a way to ensure that it generates valid SBML models?
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CarveMe: genome-scale metabolic model reconstruction