Cosmin Ciausu

The SEG and the original MRI data do have the same orientation(the SEG references to the T2 modality) :  The SEG has green value for foreground and yellow for...

I just wanted to confirm that the OHIF update with the condition relaxation fixed this issue with the same data mentioned above(idc dcm -> nifti -> dcm) for PatID004, ProstateX...

> @ccosmin97 please note that if you are in OHIF version 4.12.41 (however this version did not hit yet the IDC production portal, you can check the version in the...

> @ccosmin97 for the sake of completeness, can you please share the sample that allows reproducing this issue? Can you confirm this is not the issue if you use `dcm2niix`...

> > After looking at OHIF, every patIDs(cf problematic cases) nnunet seg objects is correctly rendered except PCAMPMRI-0013-T2 **if we use dcm2niix instead of sitk.** > > Can you parse...

> Cosmin, can you attach both output segmentations, the one from sitk and dcm2niix? Here are the [output segmentations](https://www.dropbox.com/sh/grp6e05g5ymi4pv/AACt5CbsY5dcW1LGMLL6ruKqa?dl=0), in dcm format, for dcm2niix and sitk dcm to nii conversion...

Overwriting the ct volume affine form with the one from the labelmaps, while preserving the ct volume header, allowed the ct file to be loaded into slicer : ``` import...