ccmeth

I found that if I only retained the third line of test.sh, that is, "conda activate whdenovo", and bash it (bash test.sh), then the above error will appeared. However, if...

I have found the solution. We need to add "eval $(conda shell.bash hook)" on the conda activate whdenovo. However, I met with another issue. 

> Hi there, > > Yes the main diagonal would be included in these calculations. If you want to exclude this, you can load the data with `load_contacts(..., z_norm =...

Sorry, I still have another question related to Figure 4c of your paper published in NAR Genomics and Bioinformatics, how can I draw the concrete numbers indicating the A-A, B-B...

> Maybe a naive question, but was your BAM file aligned with Bismark at all? I am only asking because I cannot see a Bismark mapping line in the SAM...

> Sorry for this misleading information. Yeah, I decided to perform the alignment using Bismark (bowtie2) since the bam file I previously used was generated from bwa. The age of...

> Hi there, Do you have sufficient memory to load the data into the session? Does it work for larger resolutions, like 1Mb? 1Mb also does not work for me....

 I don't think this issue is associated with memory size. After loading high-resolution (5kb) hic data, my free memory is still 41G,

Furthermore, previously, I also met with another open issues (cannot load the second .hic) reported by other person. The first .hic could be successfully loaded but the second failed (no...

Yeah, it's very strange. I tried several times but load was always not success even at low resolution (1Mb). However, another .hic files with high resolution (10kb) was success. The...