Carla Castignani

Issue with coordinates in modkit pileup

1

Hi, I'm running modkit pileup (v0.2.4) as follows: ``` modkit pileup -t 8 --filter-threshold 0.9 {$bam} {$out_bed} --ref /ref/hg38.fa --preset traditional ``` Basecalling has been done using dorado basecaller (modified-bases...