cc-prolix

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Results 3 issues of cc-prolix

StringTie --merge

1 comment

Hey, I have a question regarding StringTie --merge: I am using StringTie to assemble novel transcripts in a very small non model genome. The genome has very few introns and...

Question to StrigTie and the use of strand-specific data

Hello! I have a question regarding the use of StringTie for assembly and merging of assembled annotations: I am working on a RNA-seq pipeline: I use HISAT2 for strand-specific alignment...

Using Portcullis on large Datasets in connection with Mikado

Hello, I am using Portcullis to analyze and quantify splice junctions of data generated with HISAT2. I have around 3000 BAM Files and am wondering what the best practice would...