transfuse

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Dependance issue

4

Hi! I'm getting the same issue references here: https://github.com/blahah/transrate/issues/202 where trying to run the binary throws a ruby problem: /home/aaron/src/transfuse-0.5.0-linux-x86_64/lib/ruby/bin.real/ruby: relocation error: /home/aaron/src/transfuse-0.5.0-linux-x86_64/lib/librt.so.1: symbol __vdso_clock_gettime, version GLIBC_PRIVATE not defined in...

aihardin

Hello! I have performed transrate analysis on every assembly (derived from different assemblers) and wondered is there a way to pass the produced output to the transfuse in order to...

asan-emirsaleh

Trace contig origin

2

It would be very useful to have access to correspondences between output and input contigs: which contigs from which assemblies were fused. For example in fasta headers: ``` >contig0.1 trinity_1:c115_g5_i1...

alephreish

Hi, is there a way to retain the original IDs of the assemblies?

sschrstn

how i can use transfuse using single ends reads?

abdo3a

Hi, when attempting to merge a few assemblies together with --left --right reads = 60+, transfuse seems to get confused. It creates a singled bam file, named after the first...

MDSharma

Hi! I've used 41 assemblies as an input to transfuse. At some point I got an error [transfuse2.txt](https://github.com/cboursnell/transfuse/files/1847683/transfuse2.txt) I have zero experience on coding, but it seems that naming the...

quelob

Salmon failure

7

I am trying to merge 4 different assemblies and got an error from Salmon. I have attached the logs as well as standard error with this message. Hope you can...

arvindsundaram

I'll preface by saying that I use Python and Java, but have never used Ruby. According to the install documentation for transfuse, all you have to do is to download...

bfristensky

Is there a draft vignette or tutorial available for transfuse yet? The one for Transrate is very helpful! Specifically I'm wondering what the difference is between contigs in the "good"...

stuartwillis