cbologa

I saw the folder, but it's empty after my runs. I'm using boltz 2.0.3. On Mon, Jun 9, 2025, 1:58 AM Jeremy Wohlwend ***@***.***> wrote: > *jwohlwend* left a comment...

Nevermind, I was using the yaml flag `msa: empty`, that's why I didn't get the msa in the output. Without that, now I got: ``` $ ls -R boltz_results_test/msa boltz_results_test/msa:...

I suspect that I just need to concatenate uniref.a3m and bfd.mgnify30.metaeuk30.smag30.a3m and use the resulting file as the local MSA. Could you please confirm if that's the case?