cbizon
cbizon
FWIW, chemical classes are all lumped in with chemical_substance. It's kind of wonky, and I think it makes theoretical sense to pull them into a separate biolink class. Practically, I'm...
I agree with your assessment @mbrush about the meaning of endogenous here, and that it's not meant as supporting evidence, so it should probably not be in that spreadsheet. But...
Yes, is there guidance on how exposures should be handled?
No, seems reasonable to me
If I understand correctly, then I agree @mbrush. Thus just seems like a difference of opinion about the way things should be mapped from UMLS to biolink?
@patrickkwang how is the ReasonerAPI planning to use this? As far as I can imagine, this would be used only for query_graphs. Is that correct? Or is the idea that...
@patrickkwang maybe you could put up an example of how we used sets in robokop?
I clicked the link but maybe I'm doing something weird b/c I don't see any query or answers? In robokop I think we're using it similarly though. The important point...
Additionally, I think we will want to be able to make statements about DNA modifications in addition to PTMs.
Note that RHEA has some terms for particular residues / modifications to those residues as in : https://www.rhea-db.org/rhea/60224