Chris Bielow
Chris Bielow
The error does not show up when only providing the `msms.txt`, for example. Providing whole folders is ok though (as long as they contain the evidence.txt)
``` java.lang.NullPointerException: null at org.obolibrary.obo2owl.OWLAPIObo2Owl.translateShorthandIdToExpandedId(OWLAPIObo2Owl.java:1739) ~[na:na] at org.obolibrary.obo2owl.OWLAPIObo2Owl.oboIdToIRI_load(OWLAPIObo2Owl.java:1679) ~[na:na] at org.obolibrary.obo2owl.OWLAPIObo2Owl.oboIdToIRI(OWLAPIObo2Owl.java:1643) ~[na:na] at org.obolibrary.oboformat.writer.OBOFormatWriter$OWLOntologyNameProvider.getName(OBOFormatWriter.java:992) ~[na:na] at org.semanticweb.owlapi.oboformat.OBOFormatRenderer$1.getName(OBOFormatRenderer.java:74) ~[na:na] at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:622) ~[na:na] at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:351) ~[na:na] at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:197) ~[na:na] at org.semanticweb.owlapi.oboformat.OBOFormatRenderer.render(OBOFormatRenderer.java:88) ~[na:na]...
Trying to open https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo in Protege 5.5 fails. The log shows: ``` INFO 11:02:13 Finished loading https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo ERROR 11:02:13 An error occurred whilst loading the ontology at https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo. Cause: Could...
When opening a file, which cannot be parsed (due to parse errors), see e.g. #28, Protege will simply not show anything in the user interface. It behaves as if the...
## Expected Behavior When using NSIS from Chocolatey to create an installer for Windows, this installer currently cannot handle strings larger than ~1024 characters. This makes it almost impossible for...
## Description fixes https://github.com/OpenMS/OpenMS/issues/7530 the following parameters get renamed: + score:pep -> score:psm; + score:prot -> score:protein + score:protgroup -> score:proteingroup and their new default value is 'nan', which means...
When using an IDFilter after a FalseDiscoveryRate node, then setting `-score:pep 0` does not filter anything (it skips the filter), but worse: the user cannot tell (since there is no...
to support output folders, as implemented in https://github.com/OpenMS/OpenMS/pull/7497 (to be merged after Release 3.2). @poshul :-)
## Description A set of fixes to support Qt6 (not backwards compatible to Qt5, since we have to use new functions in places). Tested and running fine on Windows. Needs...
## Description - [FEATURE, LIBRARY] allow output directories for TOPP tools] - [FEATURE] allow to edit directories in INIFileEditor - [FEATURE] use new output dir functionality in QualityControl TOPP tool...