shorah
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Error in analysing virus data
Hi, this is the error i get from the terminal:
Traceback (most recent call last):
File "./shorah.py", line 142, in <module>
keep_files=options.k, alpha=options.a)
File "/home/capemaster/Desktop/SHORAH/shorah-master/dec.py", line 399, in main
proposed[beg] = (get_prop(dbg_file), j)
File "/home/capemaster/Desktop/SHORAH/shorah-master/dec.py", line 252, in get_prop
return prop
UnboundLocalError: local variable 'prop' referenced before assignment
The tail of the dec.log is reported.
DEBUG 2014-04-16 12:06:05,696 run_dpm 178 run -i w-JX480631-7706-7906.reads.fas -j 54405 -t 10881 -a 0.100000 -K 20 finished
DEBUG 2014-04-16 12:06:05,696 run_dpm 179 Child /home/capemaster/Desktop/SHORAH/shorah-master/diri_sampler returned 0
DEBUG 2014-04-16 13:30:21,533 run_dpm 178 run -i w-JX480631-7840-8040.reads.fas -j 56490 -t 11298 -a 0.100000 -K 20 finished
DEBUG 2014-04-16 13:30:21,534 run_dpm 179 Child /home/capemaster/Desktop/SHORAH/shorah-master/diri_sampler returned 0
DEBUG 2014-04-16 13:30:21,534 run_dpm 170 /home/capemaster/Desktop/SHORAH/shorah-master/diri_sampler -i w-JX480631-7907-8107.reads.fas -j 52110 -t 10422 -a 0.100000 -K 20
DEBUG 2014-04-16 14:41:19,600 run_dpm 178 run -i w-JX480631-7907-8107.reads.fas -j 52110 -t 10422 -a 0.100000 -K 20 finished
DEBUG 2014-04-16 14:41:19,601 run_dpm 179 Child /home/capemaster/Desktop/SHORAH/shorah-master/diri_sampler returned 0
INFO 2014-04-16 14:41:19,601 main 392 reading windows for start position 135
WARNING 2014-04-16 14:41:19,602 correct_reads 227 No reads in window 135?
INFO 2014-04-16 14:41:19,602 main 396 this is window w-JX480631-135-335
I got the same error in many platforms. I successully analysed another sample created in the way. What is going on?