Segmentation fault: 11

[tantrev]

I was just trying to test SCITE on an extremely sparse genotype matrix, but it fails with "Segmentation fault: 11". A copy of my test data may be found here - scite.csv.zip - and my command was:

./scite -i scite.csv -n 27 -m 119 -r 1 -l 900000 -fd 6.04e-5 -ad 0.21545 0.21545 -cc 1.299164e-05

Any help would be more than appreciated. Thank you.

[jahnka]

Try setting n to be 26. I think you just miscounted the number of mutations. I will update the code to print a warning in such cases. You also may want to check your data. There are only missing data points and some homozygous mutations.