NGS-pipe

NGS-pipe copied to clipboard

Hello and thank you very much for sharing your work! I was wondering how much memory is needed for running the pipeline for DNA analysis, in order to know in...

luantunez

No example for DNA available

1

The example pipeline for DNA data seems to be empty.

Mehnen

hello, where to download and config these fields ? "general":{ "sequencingAdapter": "/path/to/adapters.fa", "jsvmBetaBinParams": "/path/to/jsvm_beta_bin_params.cfg", "jsvmBetaBinPriors": "/path/to/jsvm_beta_bin_priors.cfg", "jsvm_0.7.5_jointPriors": "/path/to/joint_priors.cfg", "jsvm_0.7.5_jointParams": "/path/to/joint_params.cfg", "adaclassifier_snp": "/path/to/IS3A.MVJSD.sSNV.tsv.Classifier.RData", "adaclassifier_indel": "/path/to/IS3A.MVJSD.sINDEL.tsv.Classifier.RData" } thanks !

pl618

No example for WGS data

1

Thanks for developing this nice pipeline. I'm trying to use it for WGS data. In the wiki page (https://github.com/cbg-ethz/NGS-pipe/wiki/Installation-&-Testing), I saw the the command lines for WGS data. But I...

readbio