null in consensus sequence

[tolot27]

Using the newest version 0.3.1 with or without a reference sequence I found some null strings in the consensus sequence. Also I do not get any Ns, even if I change -pluralityN.

[tolot27]

If I use majority vote (-m) the null strings are gone.

[armintoepfer]

Feel free to issue a PR. Nobody is working actively on the code base.

[tolot27]

I wonder why you closed all issues just because nobody is working on it. This is IMHO not a good practice.

[armintoepfer]

Unless you fix it yourself and provide a patch, this issue is not helpful. Even if someone would want to fix it, there is no data to reproduce your problem.