Christophe Avenel

Add support for sharing task with friend

4

Hi, I am trying to add a task in a shared category. On the web page (any.do), the task is automatically shared as well. But with the python biding it...

Viewport only takes a quarter of the available space in MacOS

3

When opening an image in FastPathology in MacOS, the image is only visible in a quarter of the usual space:  When zooming on the tissue, it zooms on the...

The parameters for the constructor should be: ``` from gi.repository import Grx @accepts(Grx.Font, Grx.Color) text_options = Grx.TextOptions(font, fg) ``` According to @dlech, it looks like the problem is only for...

Visium HD support

7

This PR adds support for Visium HD slides. - [ ] Update metro map with Visium HD

Load Visium HD generated without microscopy image

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Hi, SpaceRanger can be run on Visium HD data without a full resolution microscopy image, and only the CytAssist image. This will create a metadata_json with `"microscope_colrow_to_spot_colrow": null`, which will...

This PR adds Visium test data (https://github.com/nf-core/test-datasets/tree/modules/data/genomics/homo_sapiens/10xgenomics/spaceranger/human-lung-cancer-post-xenium_hd_ffpe) to the SpaceRanger module.

When trying to get centroids of labels, the function `get_centroids` is really taking forever, even on small data. This makes it very difficult to run on real life data. For...

Add DZC support

10

This PR adds support for DZC files, see discussion in https://github.com/openseadragon/openseadragon/issues/67 This is still a draft, many things are yet to be decided.

I have some data with incomplete dates (e.g. ?-?-2019). Right now I display them with the rest of the data by replacing them with a fake date (e.g. 1-1-2019), but...