Yangyang Li

[IO] VCF/BCF support

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## Question Hi dev-team! I really like the library and learning how to use it. However, I am curious about what is the progress to implement annotation_file input/output for (vcf/bcf/..)....

Hi Matainer ✋ ! I really appreciate the maintenance of the tool, and I have a question about the orientations of structural variation. For example, could we know the orientation...

Proposal: use ruff to replace flake8 and related extensions

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Now [ruff](https://github.com/charliermarsh/ruff) is blazing fast linter than flake8. Its rules are self contained and it is evolving quickly so far. Currently it has covered most useful rules. I think we...

hi @dcjones, I've made some changes in the codebase and set up a GitHub Action to make sure everything still works with our existing setup. The automated tests should help...

Proposal: Next Step

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# Current Ideas - [ ] replace panic with reasonable Error (pass the decision of handling errors to the user) - [ ] add Python binding - [ ] add...

Is it possible to build the project in mac arm model or linux platform?

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Hi! Amazing project, and I wonder if it is possible to build the project in the Mac m model or the x84_64 platform? I am not familiar with the Windows...

Describe your pull request here Language models identify chimeric artificial reads in NanoPore direct-RNA sequencing data. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR)....