carsen-stringer

I get what you are saying and these sorts of features could be added. For the trial structure ideally you would give starts and stop times in the general frame...

cells in the anatomical channel are detected with cellpose. then `F_chan2.npy` is the activity inside each of those ROIs across time in the functional channel. is that sufficient for your...

it is not possible to specify the frames, this would require some implementation, but if you have the frames loaded from the binary you can call this function: https://github.com/MouseLand/suite2p/blob/53eae961d08134dfb3cd0591dbad17c40905a02e/suite2p/registration/metrics.py#L18

consolidating issues: #802

thanks @CBroz1 ! yeah I've never actually dealt with that case myself

the ROIs are extracted in the order of variance explained -- how much variance they explain of the movie. this is saved in ops in `'Vmax'` [Vmax](https://github.com/MouseLand/suite2p/blob/53eae961d08134dfb3cd0591dbad17c40905a02e/suite2p/detection/sparsedetect.py#L429) but could be...

you currently cannot export the ordering from the suite2p gui, I will add the enhancement tag I think the problem you're running into with rastermap on the command line is...

generally I would not recommend a super large `smooth_sigma_time`, you will be missing some movements of the sample. therefore I think this warrants a warning in the code / documentation...

could this be when the tiff is saved it is a different format? have you checked the fluorescence values from stat?

I don't feel comfortable accepting this change without documentation and some weigh-in from @jcouto and other people who use scanbox