carsen-stringer

sorry matlab does not handle bigtiff's well. you either have to split the tiffs or use the python version :/

Sorry for not answering this sooner - Henry (@hwpdalgleish ) developed registers2p and knows more about this. Julie Lee (@jjlee42 ) also knows a lot about how it works and...

is this still not working?

Sorry Dana I think it's because you have an older version -- blockReg2P is no longer used in the pipeline. Can you make sure you've pulled the latest version of...

Sorry there isn't good documentation on this. The pipeline allows you to have separate folders with different numbers of channels (say you don't collect the red channel during the whole...

The python version is here: https://github.com/MouseLand/suite2p

Can you post what your db file looks like? @marius10p will the matlab version work with such large tiffs?

I'm sorry Marius misinformed you, the Matlab version can only work with tiffs less than 2gb, so you will have to split the tiff up into separate tiffs or use...

what diameter setting are you using? The diameter determines the amount of smoothing. That over-segmenting may not happen if you smooth more perhaps?

Do you have target frame non-empty? I can see how that block could error (line 65 if min(ops.NimgFirstRegistration, numFr*nplanes*nchannels) is the ops.NimgFirstRegistration). However, in the else statement (line 102), tiffs...