Jorge Carrasco
Jorge Carrasco
### Description In the `user_generated_inits` file, if there is a row specifying `conc_unbalanced` parameters for balanced metabolites, maud will spit a wall of Stan errors: ``` ... Exception: ode_bdf_tol: ode...
Right now, there is only one `psi` variable that all transporters share for the membrane potential. Each compartment pair should have their own.
Hi! Colorama version 0.4.1 dropped support of python 3.4. For running in unit testing, it would be very convenient to have the version of colorama pinned to 0.4.0, that still...
### Description [MultiTFA](https://github.com/biosustain/multitfa/) is a multivariate thermodynamics-based metabolic flux analysis package. It constrains the thermodynamic calculations more tightly by making use of the covariance matrix of formation energies instead of...
Geckopy should support 3.10. There is a problem with the requests dependency on CI for python 3.10 that needs to be investigated, that's why it is not there for now.
It is nice to avoid all those REV reactions but the complexity of managing this under the hood in the solver is too hard to debug and does not produce...
### Description `geckopy` currently supports adding a global protein pool or a protein pool to a handful of specified reactions but does not easily allow for adding multiple protein pools...
This is pending on https://github.com/pypa/pypi-support/issues/1124 For users that stumble upon this issue, please install it from source, as any normal python package: ```bash git clone https://github.com/ginkgobioworks/geckopy cd geckopy pip install...
### Why Feedback from people at UQ: we would like to have multiple columns to represent point estimates of different nature (transcriptomics/protemics) or multiple replicates for the same data and...
Need to research into this, but the idea is that the font size and total size of the legend should be a bit more responsive and scale up with the...