Jorge Carrasco

**Is your feature request related to a problem? Please describe.** Markdown has now a treesitter implementation. This came with language-specific syntax highlighting for the different code blocks in the markdown...

**Is your feature request related to a problem? Please describe.** In some TUI applications (like a text editor), the window title might be modified to display some information (see for...

Refactor some core funtionality to ease the extension of cobrapy by third parties

7

### Checklist - [x] There are [no similar issues or pull requests](https://github.com/opencobra/cobrapy/issues) for this yet. Related to the discussion on https://github.com/opencobra/cobrapy/issues/967, in the sense that it is about libraries building...

Minimum Node version

1

### Summary Going through the [rustwasm book's Hello world](https://rustwasm.github.io/docs/book/game-of-life/hello-world.html), I was unable to generate the `www` directory with the suggested command: ```shell npm init wasm-app www ``` This command generates...

This may be a bit too specific but I find it quite common. The idea is to have a function `map_linear_colors()`, similar to `map_colors()`, that operates on Images with Rgb/a...

I am trying to find an _easy_ way to parallelize [`map_colors`](https://docs.rs/imageproc/0.21.0/imageproc/map/fn.map_colors.html). Does anyone has a solution for that? From an user perspective, I believe that the easiest way would be...

Upgrade to xlrd 2.0.0 + openpyxl

6

Related to #2632 ### Description [xlrd](https://pypi.org/project/xlrd/) dropped support for anything but `xls` at [2.0.0](https://github.com/python-excel/xlrd/blob/master/CHANGELOG.rst#200-11-december-2020) https://github.com/python-excel/xlrd/pull/371. Using the old version may cause security vulnerabilities and potential incorrect parsing. It is also...

CI is failing for python 3.6 at the moment because of CPLEX. Was the CPLEX secret removed? Affected PRs: #287 and #289

Some breaking changes were introduced (mainly plotting #265) that invalidate part of the documentation/notebooks. Related issues: * [x] Fix inline markup (#188 ) * [x] Sympy problem that [illustrates the...

[This line](https://github.com/biosustain/cameo/blob/devel/tests/test_api.py#L48) should be put before the test to do what it's supposed to do. I'll submit a small PR after https://github.com/biosustain/cameo/pull/281 is merged (and I guess we can make...