bioc-project

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add a section

1

In this PR, I added a new section **"The install.packages() function"** to introduce how to install Bioconductor packages with the command `install.packages()`. Feel free to accept it or reject it...

jokergoo

Update R Version Installation Guidance

1

Hi Kevin, Vince (@vjcitn) noticed the docs suggest installing R 4.1.x [here](https://carpentries-incubator.github.io/bioc-project/) but had difficulty finding how to change this advice via 'Edit in GitHub'. Considering R's frequent updates, perhaps...

mblue9

Update life cycle stage?

1

Is _pre-alpha_ still the most appropriate description of the maturity of this lesson? Looking through the lesson site, the content looks quite mature, and I wonder if you have begun...

tobyhodges

Don't explicitly mention board officers

1

Explicitly mentioning the "current officers" of the TAB/CAB in the 'Introduction to Bioconductor' episode seems prone to getting outdated - can we point to the respective websites instead for this...

csoneson

Transition to workbench format

6

Dear @zkamvar When you get a chance, can you please help me transition this repository to the workbench format ? Many thanks in advance and do let me know if...

kevinrue

make repeatedly downloads teaching material

1

When I run make site or make serve I see three files being downloaded (I think by _episodes_rmd/download_data.R). Seems like this is the wrong place for a downloader script (maybe...

alanocallaghan

Mention Docker images of the Bioconductor project

1

Which episode could that go in? Instructions Thanks for contributing! :heart: If this contribution is for instructor training, please email the link to this contribution to [email protected] so we can...

kevinrue

The section "S4 classes and methods" somewhat brutally goes into technical details, and may benefit of a "motivation" section or similar to warm up the episode https://carpentries-incubator.github.io/bioc-project/05-s4.html

kevinrue