Carissa Bleker

# Description The organism is not shown in the model landing page or in the model details (in the API), but should be available, since it is shown in the...

Edge path incompatible with arrows

1

When using a `path=` in edge specifications, issues occur in styling the arrow head, both using `style=` or `Direct`. MWE and screenshot below. Perhaps this can be noted in the...

In this package `igraph` is used to mean "interaction graph", however, [igraph](https://igraph.org/) is also a very popular graph analysis tool in Python (also R, Mathematica, and C++ ), with similarities...

add_image_annotation only works https

1

Hi, I am trying to load a background annotation (image) to my network. Using ```p4c.add_annotation_image(url="https://www.ucsd.edu/_resources/img/logo_UCSD.png", network)``` works: the logo is loaded, I can also view it in the ImageManager, the...

style bypasses for node width and node height change current style to 'default'

6

When using the style bypasses for node width and node height, https://github.com/cytoscape/py4cytoscape/blob/e1466020ec7dbfb3cfdd438082a00976b3895d41/py4cytoscape/style_bypasses.py#L736 https://github.com/cytoscape/py4cytoscape/blob/e1466020ec7dbfb3cfdd438082a00976b3895d41/py4cytoscape/style_bypasses.py#L790 the message: style_name not specified, so updating "default" style. is given, and the "active" style is changed...

load_table_data changes the table

1

Using p4c.load_table_data changes the input table (adding a `row.names` column. This is unexpected. If the column needs to be added, maybe that should be done on a copy? ``` df...

edgelist reader removes deliminators if deliminator is white-space and file has empty fields [BUG]

1

This `line.strip` without an argument, means a white-space delimited file (e.g. tab, which is quite common) with empty edge attribute(s) in the last column(s) results in a crash with error...