cariaso

unicode issue with upstream parse of clinvar , visible with clinvar__id = 184594

1

The query ``` select clinvar__disease_names from variant where clinvar__id = 184594; ``` returns ``` Hereditary cancer-predisposing syndrome|Neurofibromatosis, type 1|Café-au-lait macules with pulmonary stenosis|Neurofibromatosis, familial spinal|Neurofibromatosis-Noonan syndrome|not specified|not provided ``` which...

ClinGen Allele Registry ids?

2

Is there any way that open-cravat is able to provide the IDs from http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/landing such as CA123770 shown at http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=CA123770 I've not yet seen a downloadable file for offline use,...

https://github.com/lepture/authlib/blob/169c7dcfc47478c8d55553cc95fb0f5578162b77/authlib/integrations/flask_oauth2/resource_protector.py#L73 `require_oauth.acquire` cannot be used to protect large POSTs, where the data will be streamed, because the usage of `_req.data` on line 73 fills memory. Replacing `_req.data` with a simple...

The NCBI ALFA Release 3 – New addition of Genotype Frequency and HWE https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2023q3/000236.html means that there is substantial new info that could be made available as annotation but the...

Heads up. I have an automated build that has used this repo for a long time. It just broke against 6db0c70521e1abb520481535b1632fc8611a8030 rolling back to 8b5e0fc3cd34da3197c0a8b3eade5b6c2f8d519b seems to work fine. I...

add single quotes around a bash command line param

eventual consistency race condition bug during addnodes

1

starcluster addnode acluster2 -n 35 StarCluster - (http://star.mit.edu/cluster) (v. 0.95.6) Software Tools for Academics and Researchers (STAR) Please submit bug reports to [email protected] > > > Launching node(s): node022, node023,...

https://www.reddit.com/r/aws/comments/ag8u9l/ses_email_viewer/

Although I actually found the issue in the https://github.com/sein-tao/cyvcf fork, that one doesn't allow issues, while this one seems no longer active. issue occurs when 2 files are being walked,...

[failcase.vcf.gz](https://github.com/jamescasbon/PyVCF/files/1282898/failcase.vcf.gz) attached is a test case I've found in the wild. I've trimmed this down to a single line, which fails in that call.data has no .GT can anyone explain...