Can Ergen
Can Ergen
I guess it's fine to remove. I would assume we do two tests: upregulated vs rest and downregulated vs rest. We output only the winner of the test for upregulated/downregulated....
Put in other fixes, that we discussed when we met. Especially the threshold was computed wrong. Subset_idx is something that I need for resolVI and it needs to be in...
Hi, thanks for posting this. Please post the full error as it makes it easier to figure out what's causing this. I opened the issue for MuData as it seems...
Fixed in MuData.
Your issue here is MuData and not AnnData or scvi-tools. Can you verify that the issue arises when you just import MuData and then follow their installation guideline?
Just checking is it still faster if you load the AmnData in disk backed mode? This would indeed be surprising while the other overhead could come from loading from disk?...
I really like this idea and look forward how it goes. It will most probably be faster than metal PyTorch. It’s a major undertaking to do this port though and...
For now pinning jax
@ori-kron-wis can you try with the fix suggested in https://github.com/jax-ml/jax/issues/26162? We can also wait for the next jax release that contains it.